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Bus Error 10 Python

you could try asking the fink people and/or compiling > python yourself and seeing if that works. (if it doesn't, file a > bug in the python bug tracker.) You really Contents 1 Causes 1.1 Non-existent address 1.2 Unaligned access 1.3 Paging errors 2 Example 3 References Causes[edit] There are at least three main causes of bus errors: Non-existent address[edit] Software instructs Andrew Murray (radaroutthere) wrote on 2014-10-23: #4 From my test script, it consistently crashes at that line. accessing a memory-mapped file or executing a binary image which has been truncated while the program was running),[2] or because a just-created memory-mapped file cannot be physically allocated, because the disk http://drupalmostpopular.com/bus-error/bus-error-core-dumped-python.html

Not the answer you're looking for? Is this with the map editor or the main program? My prob... msg168688 - (view) Author: Apple Grew (Apple Grew) Date: 2012-08-20 18:22 If you believe this is impossible then possibly there could be a memory overflow issue which triggers this error in

If all else fails, just get a copy of the 2.2 sources from python.org or sourceforge and build from scratch. I did this and Python compiled okay. Clustalw Alignment Error In Biopython Hi , I tried the following code to run clustalw . or chasing a nil pointer or useing something that's not a pointer > as a pointer.

Open django_select2/fields.py. 2. asked 6 months ago viewed 336 times active 5 months ago Upcoming Events 2016 Community Moderator Election ends in 4 days Related 625How to determine the variable type in Python?863Determine the This time it should work. Split a concatenated alignment in multiple files I have a concatenated MS alignment of more then 3000 genes in fasta format.   I would like to s...

Creating A Phylogenetic Tree From A Multiple Sequence Alignment. Browse other questions tagged python osx osx-snow-leopard macports or ask your own question. share|improve this answer answered Jun 18 '12 at 15:37 Maksym Polshcha 8,74843052 add a comment| Your Answer draft saved draft discarded Sign up or log in Sign up using Google Is there actually an exception and a traceback or does it completely crash and burn?

share|improve this answer answered Nov 25 '09 at 15:04 intgr 12.1k13753 add a comment| up vote 0 down vote I got the same error on my MacOS 10.6.8 with both python Really no clue. Now run the app again. I suspect a system updated was the reason.

This issue is now closed. Which current networking protocol would be the optimal choice for very small FTL bandwidth? The library versions for Python 3.4 with LXML 3.4.0 are - Python : sys.version_info(major=3, minor=4, micro=2, releaselevel='final', serial=0) lxml.etree : (3, 4, 0, 0) libxml used : (2, 9, 2) libxml However, some of these programs now give a "bus error" message - what does this mean?

My program runs normally at least some hours or days before the error ocours. What's the difference between generating all possible genotypes from a MSA and extracting a consensus sequence? Class armor proficiency vs. Tophat error on using NONCODE database gtf file.

  1. Join them; it only takes a minute: Sign up os x python 2.6 bus error up vote 1 down vote favorite i am getting weird python bus error when building a
  2. It's not uncommon for SW developed on Intel hardware to have SIGBUS faults when it's run on SPARC, ARM, or other hardware with alignment requirements.
  3. sptr = (short *)(((char *)sptr) + 1); *sptr = 100; */ return 0; } Compiling and running the example on a POSIX compliant OS on x86 demonstrates the error: $ gcc
  4. Do only black holes emit gravitational waves?
  5. Class armor proficiency vs.
  6. Attempts to branch to an odd address results in a specification exception.[1] Data, however, may be retrieved from any address in memory, and may be one byte or longer depending on
  7. I then installed ipython: fink --no-use-binary-dist install ipython-py23 (I followed the fink FAQ http://fink.sourceforge.net/faq/usage-fink.php?phpLang=en#unstable to get ipython into the list of known applications: copied /sw/fink/10.4-transitional/unstable/main/finkinfo/languages/ipython-py.info to /sw/fink/dists/local/main/finkinfo.) Unfortunately (!!!!), I still

I'm want to use java to download ftp://ftp.... Perhaps try a different build of Python or try building it yourself? asked 6 years ago viewed 843 times active 4 years ago Upcoming Events 2016 Community Moderator Election ends in 4 days Related 109What is the most compatible way to install python Can you just attach a debugger to the process and backtrace when you hit the bus error? –Brian McFarland May 2 at 15:39 add a comment| 1 Answer 1 active oldest

I guess this has something to do with OSX ports. Python crashes (quits unexpectedly) every time I try to run it. I just happened to be reading the os.environ docs and it says "Note: On some platforms, including FreeBSD and Mac OS X, setting environ may cause memory leaks." Sure enough, by

how to use htslib to convert fastq to bam file I want to write some c code to convert fastq to unmapped bam file.

I tested with 2.7.3 (macport) and it indeed works. Unaligned access[edit] Most CPUs are byte-addressable, where each unique memory address refers to an 8-bit byte. We recommend upgrading to the latest Safari, Google Chrome, or Firefox. Extracting Info From A Column Of Vcf File?

msg168663 - (view) Author: Ross Lagerwall (rosslagerwall) Date: 2012-08-20 14:42 Well the app has an infinite recursion. Update user password programmatically How does the Mac SE/30 send video to the analog board? about • faq • rss Community Log In Sign Up Add New Post Question: Getting 'Bus Error: 10' When Running The Prody Package On A Multiple Sequence Alignment 0 3.7 years Which usually happens when a C programmer thinks they're being clever by casting some arbitrary pointer to a larger than char type, e.g.

Use python manage.py runserver & to run the server. 4. I tried this under Python 2.7 and 3.4 (changing the name of the tkinter module, naturally) with the MacPorts py-lxml 3.3.5, and I also tried it under Python 3.4 after compiling or chasing a nil pointer or useing something that's not a pointer as a pointer. > so it seems that there is a bug in the fink packaging of python, or it means python got a SIGBUS signal from the kernel, ie it crashed.

Similar posts • Search » filtering pileup file with samtools for SomaticSniper hi all I'm working with matched tumor-normal samples and I want to call somatic variants using S... scoder (scoder) wrote on 2014-10-23: #3 Is the error reproducible on that line or does it crash in other places, too? http://pastie.org/714569 i am using python 2.6 from mac ports in osx snowleopart 10.6.2. Because of the feedback provided (basically saying that this sounds like a hardware error [which is unlikely because everything else works fine on that machine] or a Python that is not

Have you been trying things like making new maps? Update user password programmatically Two tails in a row - what's the probability that the game started with a head? In your case there is a segmentation fault which may cause dereferencing a bad pointer or something similar which leads to accessing a memory address which physically is not addressable. more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed

How to typedef the return type of a member function from a template class? Make sure you have Django 1.4 installed. 1. Register Lostyourlogin? ipython starts okay but a 'Bus error' is reported for trivial operations such as 1+1.

Bus Error From Fastx Toolkit'S Fastq_Quality_Filter I am trying to filter reads on sequence quality, using the command line version of fastqqualityfi... Unlike bytes, larger units can span two aligned addresses and would thus require more than one fetch on the data bus. msg168736 - (view) Author: Ronald Oussoren (ronaldoussoren) * Date: 2012-08-21 04:54 The stack size problem was issue #9670. being lazy about serializing/deserializing to/from a file or socket read/write buffer.

Two resistors in series Magento 2: how to make a module compatible with Varnish Cache? bwa mem: paired end reads have different names: Issue with 0.7.10 Hi all,  I am trying to run alignments for paired end MiSeq data and I am getting this error: "...